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From irefindex

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  • iRefIndex MITAB Mapping
    | rowspan="4" | <tt>int_xref.dbid = id(''database'')</tt><br><tt>int_xref.acc = ''identifier''</tt> | <tt>int_xref.dbid = id('psi-mi')</tt><br><tt>int_xref.acc = ''code''</tt>
    3 KB (366 words) - 15:37, 29 June 2011
  • Advanced iRefWeb searches
    http://wodaklab.org/netility/graph?type=PROTEIN&id=1354791 | ACT_ID||intearctor.id||||
    3 KB (522 words) - 01:14, 5 August 2010
  • Plugin test cases 0.89
    Taxon id: Any Taxon id: Any
    10 KB (1,397 words) - 17:26, 25 June 2010
  • Sources iRefIndex 9.0/Issues
    === Yeast taxon id changes === The only interaction id available from the BioGrid files are already being used and also there in t
    4 KB (649 words) - 14:38, 7 November 2011
  • Protein identifier mapping
    | 3||entrezGeneid||Entrez Gene ID. This is provided '''only''' for RefSeq identifiers; for other identifiers ...same canonical group)- one of these may have an entry in this Entrez Gene Id in this column.
    3 KB (375 words) - 17:07, 14 March 2013
  • iRefIndex Development
    entrySet/entry/experimentList/experimentDescription/@id entrySet/entry/experimentList/experimentDescription/bibref/xref/primaryRef/@id
    40 KB (4,270 words) - 16:04, 26 October 2012
  • Mapping of terms to MI term ids - iRefIndex 6.0
    # For interaction types where no cv term id is listed. # For interaction detection types where no cv term id is listed.
    31 KB (4,505 words) - 12:50, 7 April 2011
  • iRefScape Test Cases 1.0
    | rowspan="9" valign="top" | <pre>Taxon id: Any | valign="top" | <pre>Taxon id: Any
    24 KB (3,634 words) - 17:32, 24 November 2011
  • Sources and Issues Next Release
    The only interaction id available from the BioGRID files are already being used and also there in t <primaryRef db="grid" id="103" refType="identity" refTypeAc="MI:0356" dbAc="MI:0463" />
    11 KB (1,675 words) - 11:47, 26 February 2014
  • DrugBank MITAB2.6 File Format
    | <tt>drug/drugbank-id</tt> | <tt>drug/drugbank-id</tt>
    6 KB (888 words) - 14:46, 25 August 2011
  • Plugin test cases 0.8
    Taxon id: Any Taxon id: Any
    20 KB (3,064 words) - 12:43, 15 June 2010
  • DiG: Disease groups
    ...referring to a disease and evidence code| gene symbol and synonyms| OMIM id referring to gene entry| locus </pre><br/> ...parate database fields. There are nearly 800 entries with no disease omim id specified. These are mostly distinct titles.
    10 KB (1,459 words) - 11:55, 17 October 2011
  • Plugin test cases 0.86
    Taxon id: Any Taxon id: Any
    28 KB (4,119 words) - 00:10, 19 June 2010
  • Plugin test cases 0.85
    Taxon id: Any Taxon id: Any
    28 KB (4,119 words) - 14:30, 18 June 2010
  • README iRefIndex MITAB 6.0
    | ||'''Taxon Id''' ...s in row 14 are bar (<tt>|</tt>) delimited. The source db name and record id in each key are separated by a colon.
    30 KB (4,488 words) - 12:47, 9 November 2011
  • README iRefIndex MITAB experiment proposal for 7.0
    | ||'''Taxon Id''' ...s in row 14 are bar (<tt>|</tt>) delimited. The source db name and record id in each key are separated by a colon.
    29 KB (4,420 words) - 13:29, 27 October 2010
  • README iRefIndex Feedback 8.0
    ...s 7 - 9) unless the used reference had to be updated or was an entrez gene id. Columns 7 - 9 (used db, used accession and used taxon id) will be non informative.
    17 KB (2,607 words) - 08:48, 20 January 2011
  • README iRefIndex Feedback 9.0
    ...s 7 - 9) unless the used reference had to be updated or was an entrez gene id. Columns 7 - 9 (used db, used accession and used taxon id) will be non informative.
    18 KB (2,645 words) - 17:38, 9 November 2011
  • iRefScape 0.8
    ...tt>||OMIM identifier. See http://www.ncbi.nlm.nih.gov/entrez/dispomim.cgi?id=227650 ...tifier for the node assigned by iRefIndex (no two nodes will have the same ID). Each node corresponds to a distinct amino acid sequence from a distinct t
    33 KB (5,470 words) - 16:18, 6 July 2011
  • README iRefIndex expanded MITAB proposal
    * http://code.google.com/p/psimi/issues/detail?id=2 | ||'''Taxon Id'''
    52 KB (7,816 words) - 13:44, 27 October 2010
  • iRefScape 0.9
    ...tt>||OMIM identifier. See http://www.ncbi.nlm.nih.gov/entrez/dispomim.cgi?id=227650 ...tifier for the node assigned by iRefIndex (no two nodes will have the same ID). Each node corresponds to a distinct amino acid sequence from a distinct t
    36 KB (5,904 words) - 16:13, 6 July 2011
  • iRefScape Batch Files
    | geneID||NCBI Gene ID, this is always an integer
    7 KB (1,128 words) - 15:41, 6 July 2011
  • README MITAB2.6 for iRefIndex 20.0
    ...i_mitab/MITAB2.6/9606.mitab.08-28-2023.txt.zip Download human MITAB (taxon id 9606)] ...MITAB2.6/10090.mitab.08-28-2023.txt.zip Download Mus musculus MITAB (taxon id 10090)]
    56 KB (8,235 words) - 06:27, 29 August 2023
  • README MITAB2.6 for iRefIndex 19.0
    ...0/psi_mitab/MITAB2.6/9606.mitab.08-22-2022.txt Download human MITAB (taxon id 9606] ...tab/MITAB2.6/10090.mitab.08-22-2022.txt Download Mus musculus MITAB (taxon id 10090]
    56 KB (8,227 words) - 12:11, 9 August 2023
  • Mapping of terms to MI term ids - iRefIndex 8.0
    # For interaction types where no cv term id is listed. # For interaction detection types where no cv term id is listed.
    26 KB (3,077 words) - 12:50, 7 April 2011
  • iRefScape 1.0
    ...tt>||OMIM identifier. See http://www.ncbi.nlm.nih.gov/entrez/dispomim.cgi?id=227650 ...tifier for the node assigned by iRefIndex (no two nodes will have the same ID). Each node corresponds to a distinct amino acid sequence from a distinct t
    45 KB (7,264 words) - 11:10, 19 March 2013
  • Protein Interaction Resources
    ...nd:SteelBlue; color:white; border-style: none" colspan="3" align="center"| ID Mapping Service | UniProt||http://www.uniprot.org/ ||See the ID Mapping Tab
    15 KB (2,118 words) - 10:10, 23 August 2011
  • README MITAB2.6 for iRefIndex 15.0
    ...psi_mitab/MITAB2.6/9606.mitab.22012018.txt.zip Download human MITAB (taxon id 9606] ...psi_mitab/MITAB2.6/9606.mitab.22012018.txt.zip Download yeast MITAB (taxon id 559292]
    52 KB (7,771 words) - 16:03, 10 March 2018
  • README MITAB2.6 for iRefIndex 16.0
    ...si_mitab/MITAB2.6//9606.mitab.22012018.txt.zip Download human MITAB (taxon id 9606] ...si_mitab/MITAB2.6//9606.mitab.22012018.txt.zip Download yeast MITAB (taxon id 559292]
    52 KB (7,785 words) - 09:48, 9 October 2019
  • README MITAB2.6 for iRefIndex 18.0
    ...psi_mitab/MITAB2.6/9606.mitab.27062020.txt.zip Download human MITAB (taxon id 9606] ...i_mitab/MITAB2.6/559292.mitab.27062020.txt.zip Download yeast MITAB (taxon id 559292]
    52 KB (7,774 words) - 10:25, 20 August 2021
  • README MITAB2.6 for iRefIndex 17.0
    ...si_mitab/MITAB2.6//9606.mitab.27062020.txt.zip Download human MITAB (taxon id 9606] ..._mitab/MITAB2.6//559292.mitab.27062020.txt.zip Download yeast MITAB (taxon id 559292]
    52 KB (7,778 words) - 19:31, 30 June 2020
  • README MITAB2.6 for iRefIndex 10.0
    | ||'''Taxon Id''' ...instead, which all say in their record: This record was replaced with Gene ID: 6872
    52 KB (7,812 words) - 12:00, 5 April 2013
  • README MITAB2.6 for iRefIndex 14.0
    ...psi_mitab/MITAB2.6/9606.mitab.07042015.txt.zip Download human MITAB (taxon id 9606] ...psi_mitab/MITAB2.6/9606.mitab.07042015.txt.zip Download yeast MITAB (taxon id 559292]
    55 KB (8,209 words) - 09:44, 23 July 2016
  • README iRefIndex MITAB2.6 proposal for 7.0
    * http://code.google.com/p/psimi/issues/detail?id=2 | ||'''Taxon Id'''
    54 KB (8,103 words) - 12:20, 19 October 2010
  • README MITAB2.6 for iRefIndex 8.0
    | ||'''Taxon Id''' * http://code.google.com/p/psimi/issues/detail?id=2
    49 KB (7,401 words) - 12:34, 17 October 2011
  • README MITAB2.6 for iRefIndex 7.0
    | ||'''Taxon Id''' * http://code.google.com/p/psimi/issues/detail?id=2
    51 KB (7,623 words) - 15:44, 25 October 2010
  • iRefIndex Citations
    <div id="ref1">1. Bader GD, Betel D, Hogue CW: '''BIND: the Biomolecular Interactio <div id="ref2">2. Alfarano C, Andrade CE, Anthony K, Bahroos N, Bajec M, Bantoft K,
    19 KB (2,634 words) - 15:25, 15 March 2013
  • README MITAB2.6 for iRefIndex 11.0
    | ||'''Taxon Id''' ...section of http://au.expasy.org/sprot/userman.html#ID_line concerning the "ID (IDentification)" line of the flat file
    51 KB (7,688 words) - 10:45, 27 May 2013
  • README MITAB2.6 for iRefIndex 9.0
    | ||'''Taxon Id''' * http://code.google.com/p/psimi/issues/detail?id=2
    53 KB (7,933 words) - 10:41, 4 December 2012
  • README MITAB2.6 for iRefIndex 12.0
    | ||'''Taxon Id''' ...section of http://au.expasy.org/sprot/userman.html#ID_line concerning the "ID (IDentification)" line of the flat file
    52 KB (7,804 words) - 09:47, 21 June 2013
  • README MITAB2.6 for iRefIndex 13.0
    | ||'''Taxon Id''' ...section of http://au.expasy.org/sprot/userman.html#ID_line concerning the "ID (IDentification)" line of the flat file
    53 KB (7,878 words) - 10:30, 13 December 2013
  • iRefIndex Build Process
    * The DIP file omits <tt>id</tt> attributes on <tt>experimentDescription</tt> elements ...count(uid) from int_source inner join int_db on int_source.source = int_db.id group by name;
    47 KB (7,595 words) - 15:50, 4 October 2011
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