User contributions
From irefindex
- 15:31, 17 October 2011 diff hist +149 N File:Applications-internet-100x100.png 200x200 version of the file available at the following location, scaled to 100x100: http://commons.wikimedia.org/wiki/File:Applications-internet.svg current
- 14:58, 17 October 2011 diff hist -210 Donaldson Group Modernised the projects and courses tables. Removed the blue borders/rules.
- 14:32, 17 October 2011 diff hist -106 iRefIndex Switched to headings where possible in order to use sans-serif fonts applied to headings. Tidied up some formatting.
- 13:19, 17 October 2011 diff hist +9 MediaWiki:Sidebar Changed the sidebar title.
- 13:23, 14 October 2011 diff hist -260 irefindex-new Moved the table of links up.
- 14:20, 13 October 2011 diff hist +358 iRefScape 1.0 →Source Code: Added 1.17 links.
- 15:50, 4 October 2011 diff hist +2 m iRefIndex Build Process →Clone seguid: Fixed label reference. current
- 14:57, 4 October 2011 diff hist +27 iRefIndex Build Process →Downloading the Source Data: Added new sources.
- 10:53, 3 October 2011 diff hist +215 iRefIndex Data Preparation for iRefWeb Added iRefWeb source_db note.
- 10:50, 3 October 2011 diff hist +155 iRefIndex Development Added iRefWeb source_db note.
- 15:09, 29 September 2011 diff hist +324 iRefIndex Output and Statistics Added a mention of the mapper_tables.sql script.
- 10:13, 29 September 2011 diff hist -397 iRefIndex Data Preparation for iRefWeb →Generating the Database Dump: Replaced the command with a script invocation.
- 10:11, 29 September 2011 diff hist +373 iRefIndex Data Preparation for iRefWeb →Preparing the SQL Scripts: Added a table of values.
- 15:29, 27 September 2011 diff hist -83 PSICQUIC Web Services for iRefIndex Removed port numbers, fixed links, tidied up.
- 13:27, 27 September 2011 diff hist -44 iRefIndex Release Process →Feedback: Removed the log filename from the options.
- 13:16, 27 September 2011 diff hist +187 iRefIndex Output and Statistics →Running the SQL Script: Added extra script, required before any output generation.
- 15:34, 19 September 2011 diff hist +47 N README MITAB2.6 for iRefIndex Added redirect page.
- 15:33, 19 September 2011 diff hist +52,489 N README MITAB2.6 for iRefIndex 9.0 Added iRefScape 9.0 MITAB details.
- 15:02, 19 September 2011 diff hist +43 iRefIndex Release Process →Posting the Output Files: Updated for 9.0 with new internal locations.
- 14:51, 19 September 2011 diff hist 0 iRefIndex MITAB Parser Point to the 2.6 parser. current
- 14:51, 19 September 2011 diff hist 0 m iRefIndex MITAB2.5 Parser moved iRefIndex MITAB Parser to iRefIndex MITAB2.5 Parser current
- 14:51, 19 September 2011 diff hist +39 N iRefIndex MITAB Parser moved iRefIndex MITAB Parser to iRefIndex MITAB2.5 Parser
- 12:05, 16 September 2011 diff hist 0 m PSICQUIC Web Services for iRefIndex moved README PSICQUIC web services for iRefIndex to PSICQUIC Web Services for iRefIndex: Make a nicer title.
- 12:05, 16 September 2011 diff hist +49 N README PSICQUIC web services for iRefIndex moved README PSICQUIC web services for iRefIndex to PSICQUIC Web Services for iRefIndex: Make a nicer title. current
- 12:04, 16 September 2011 diff hist +49 N PSICQUIC Added redirect page. current
- 10:41, 14 September 2011 diff hist +607 iRefIndex Development Added Cytoscape-related changes.
- 10:29, 2 September 2011 diff hist -186 Statistics iRefIndex 9.0 Updated statistics.
- 17:22, 30 August 2011 diff hist +228 iRefIndex Build Process →Running the Program: Added note about lastUpdate.obj files.
- 14:46, 25 August 2011 diff hist +315 DrugBank MITAB2.6 File Format →Format Summary: Added a note about the nature of uidB. current
- 14:26, 23 August 2011 diff hist +106 iRefIndex Build Process →Free and proprietary releases & clone seguid: There is now only a single distribution per version.
- 11:44, 19 August 2011 diff hist +97 iRefIndex Release Process →Updating the Wiki: Added redirect pages note.
- 15:47, 18 August 2011 diff hist +1 m Sources and Issues Next Release →Taxon specific MITAB files (post-processing issue): Added closing bracket.
- 15:44, 18 August 2011 diff hist +23 Sources and Issues Next Release →BioGrid interaction record ids (pre-build issue): Added link to bug.
- 14:39, 18 August 2011 diff hist +6 Sources and Issues Next Release →Sequence related resources (not updated yet): Added seguid timestamp.
- 13:02, 18 August 2011 diff hist +23 Sources and Issues Next Release →CORUM methods (code change implemented): Added link to bug.
- 17:11, 17 August 2011 diff hist +1,013 iRefIndex Data Preparation for iRefWeb Added identifier mapping table notes.
- 17:05, 17 August 2011 diff hist +187 Sources and Issues Next Release →RIGID recalculation (pre-build issue): Added note, fixed spelling.
- 16:53, 17 August 2011 diff hist +18 m Sources and Issues Next Release →RIGID recalculation (pre-build issue): Added link to bug.
- 14:34, 17 August 2011 diff hist +23 m Sources and Issues Next Release →Taxon specific MITAB files (post-processing issue): Added link to bug.
- 14:33, 17 August 2011 diff hist +17 m Sources and Issues Next Release →Repeated lines (post-processing issue): Added link to report.
- 14:33, 17 August 2011 diff hist +23 Sources and Issues Next Release →Yeast taxon id changes: Attempt to add InterWiki link.
- 12:55, 17 August 2011 diff hist -930 Sources and Issues Next Release Removed old information, adjusted headings.
- 12:01, 17 August 2011 diff hist +186 Sources and Issues Next Release →Issues: Attempted to tidy up the issues.
- 14:29, 15 August 2011 diff hist +1,555 iRefIndex Data Preparation for iRefWeb Added database dump and testing details along with a category link.
- 15:56, 12 August 2011 diff hist -9 iRefIndex Release Process →Feedback: Probably need to specify a generic output directory.
- 10:03, 8 August 2011 diff hist -55 iRefScape 1.0 Installation Tidied up somewhat.
- 15:05, 22 July 2011 diff hist +579 iRefIndex Release Process →Feedback: Added details of invoking the feedback process.
- 10:42, 21 July 2011 diff hist +736 iRefScape 1.0 Added source code section.
- 10:41, 20 July 2011 diff hist +112 iRefIndex Data Preparation for iRefWeb →Running the SQL Scripts: Corrected database usage.
- 10:32, 20 July 2011 diff hist +413 iRefIndex Data Preparation for iRefWeb →Creating a Database: Added notes on access to iRefWeb.
- 10:26, 20 July 2011 diff hist +81 iRefIndex Data Preparation for iRefWeb →Running the SQL Scripts: Note which database is involved.
- 17:02, 19 July 2011 diff hist +2,915 N iRefIndex Data Preparation for iRefWeb Added some documentation of the iRefWeb processing.
- 16:39, 19 July 2011 diff hist +68 iRefIndex Release Process →iRefWeb: Added a link to a new page.
- 15:30, 15 July 2011 diff hist +40 iRefIndex Output and Statistics →Running PSI_MI_TAB_Maker: Changed the invocation.
- 14:15, 15 July 2011 diff hist +21 iRefIndex Output and Statistics →Running the SQL Script: Split TAB_MAKE.sql into two.
- 15:35, 14 July 2011 diff hist +279 iRefIndex Release Process Added initial entries for iRefScape and iRefWeb.
- 15:31, 14 July 2011 diff hist +459 iRefIndex →iRefWeb: Data availability via web interface: Added LinkOut details.
- 15:18, 14 July 2011 diff hist +149 iRefIndex Added iRefScape image and link.
- 15:13, 14 July 2011 diff hist +261 Donaldson Group →Projects: Added iRefScape.
- 15:13, 14 July 2011 diff hist +32 N File:2011-07-14-iRefScape.png An example graph from iRefScape. current
- 15:13, 14 July 2011 diff hist +32 N File:2011-07-14-iRefScape-180x180.png An example graph from iRefScape. current
- 15:12, 14 July 2011 diff hist +32 N File:2011-07-14-iRefScape-100x100.png An example graph from iRefScape. current
- 14:19, 14 July 2011 diff hist -2 m iRefScape 1.0 →Questions and answers about list comparison: "appears"
- 11:36, 14 July 2011 diff hist +406 iRefIndex Build Process →Make Cy tables (canonical): Added database script details.
- 16:27, 13 July 2011 diff hist -5 m iRefScape 1.0 Added the release date.
- 16:27, 13 July 2011 diff hist 0 iRefScape Updated the redirect. current
- 13:58, 13 July 2011 diff hist -45 m iRefScape Test Cases 1.0 →Not currently tested: Iterations and canonical expansion are generally tested.
- 17:47, 11 July 2011 diff hist +20,563 N Statistics iRefIndex 9.0 Added a tentative page for iRefIndex 9.0.
- 14:49, 11 July 2011 diff hist 0 iRefIndex Build Process Changed ordering.
- 12:03, 8 July 2011 diff hist +200 iRefIndex Build Process →Running BioPSI_Suplimenter (continued): Added required steps.
- 17:02, 7 July 2011 diff hist +10 iRefScape 1.0 →Questions and answers about list comparison: Tidied up slightly.
- 16:29, 6 July 2011 diff hist 0 m iRefScape 0.5 moved README Cytoscape plugin 0.5x to iRefScape 0.5: Simplify the page names. current
- 16:29, 6 July 2011 diff hist +27 N README Cytoscape plugin 0.5x moved README Cytoscape plugin 0.5x to iRefScape 0.5: Simplify the page names. current
- 16:28, 6 July 2011 diff hist 0 m iRefScape 0.6 moved README Cytoscape plugin 0.6x to iRefScape 0.6: Simplify the page names. current
- 16:28, 6 July 2011 diff hist +27 N README Cytoscape plugin 0.6x moved README Cytoscape plugin 0.6x to iRefScape 0.6: Simplify the page names. current
- 16:28, 6 July 2011 diff hist 0 m iRefScape 0.7 moved README Cytoscape plugin 0.7x to iRefScape 0.7: Simplify the page names. current
- 16:28, 6 July 2011 diff hist +27 N README Cytoscape plugin 0.7x moved README Cytoscape plugin 0.7x to iRefScape 0.7: Simplify the page names. current
- 16:26, 6 July 2011 diff hist 0 m iRefScape Test Cases 1.0 moved Plugin test cases 1.0x to iRefScape Test Cases 1.0: Simplify the page name.
- 16:26, 6 July 2011 diff hist +38 N Plugin test cases 1.0x moved Plugin test cases 1.0x to iRefScape Test Cases 1.0: Simplify the page name. current
- 16:25, 6 July 2011 diff hist -962 iRefScape 1.0 Updated links, revealed dig_title, removed commented-out text related to batch files.
- 16:18, 6 July 2011 diff hist -248 iRefScape 0.8 Updated links. current
- 16:13, 6 July 2011 diff hist -119 iRefScape 0.9 Updated links. current
- 16:09, 6 July 2011 diff hist 0 m iRefScape 1.0 Installation moved README Cytoscape plugin 1.0x Installation to iRefScape 1.0 Installation: Simplify the page names.
- 16:09, 6 July 2011 diff hist +40 N README Cytoscape plugin 1.0x Installation moved README Cytoscape plugin 1.0x Installation to iRefScape 1.0 Installation: Simplify the page names. current
- 16:09, 6 July 2011 diff hist 0 m iRefScape 0.8 Installation moved README Cytoscape plugin 0.8x Installation to iRefScape 0.8 Installation: Simplify the page names. current
- 16:09, 6 July 2011 diff hist +40 N README Cytoscape plugin 0.8x Installation moved README Cytoscape plugin 0.8x Installation to iRefScape 0.8 Installation: Simplify the page names. current
- 16:07, 6 July 2011 diff hist -509 iRefIndex →iRefScape: Data availability via Cytoscape: Replaced the redundant content with a link to the iRefScape page.
- 15:59, 6 July 2011 diff hist 0 m iRefScape moved README Cytoscape plugin to iRefScape: Simplify the page names.
- 15:59, 6 July 2011 diff hist +23 N README Cytoscape plugin moved README Cytoscape plugin to iRefScape: Simplify the page names.
- 15:59, 6 July 2011 diff hist -15 iRefScape Changed the redirect.
- 15:58, 6 July 2011 diff hist 0 m iRefScape 0.8 moved README Cytoscape plugin 0.8x to iRefScape 0.8: Simplify the page names.
- 15:58, 6 July 2011 diff hist +27 N README Cytoscape plugin 0.8x moved README Cytoscape plugin 0.8x to iRefScape 0.8: Simplify the page names. current
- 15:58, 6 July 2011 diff hist 0 m iRefScape 0.9 moved README Cytoscape plugin 0.9x to iRefScape 0.9: Simplify the page names.
- 15:58, 6 July 2011 diff hist +27 N README Cytoscape plugin 0.9x moved README Cytoscape plugin 0.9x to iRefScape 0.9: Simplify the page names. current
- 15:57, 6 July 2011 diff hist 0 m iRefScape 1.0 moved README Cytoscape plugin 1.0x to iRefScape 1.0: Simplify the page names.
- 15:57, 6 July 2011 diff hist +27 N README Cytoscape plugin 1.0x moved README Cytoscape plugin 1.0x to iRefScape 1.0: Simplify the page names. current
- 15:48, 6 July 2011 diff hist +235 iRefScape 1.0 Changed various links, adding links to the batch files page.
- 15:45, 6 July 2011 diff hist 0 m iRefScape plugin menu moved README Cytoscape plugin menu to iRefScape plugin menu: Using the actual name of the plugin. This makes it easier to find the page in the category, too. current
- 15:45, 6 July 2011 diff hist +35 N README Cytoscape plugin menu moved README Cytoscape plugin menu to iRefScape plugin menu: Using the actual name of the plugin. This makes it easier to find the page in the category, too. current
- 15:41, 6 July 2011 diff hist +7,110 N iRefScape Batch Files Moved batch search information to another page. current
- 15:29, 6 July 2011 diff hist -6,958 iRefScape plugin menu Moved batch search information to another page.
- 14:32, 6 July 2011 diff hist +789 iRefScape plugin menu →iRefScape user searchable index: Added a template and reworded.
- 14:13, 6 July 2011 diff hist 0 m iRefScape plugin menu →iRefScape search with batch file: Replaced spaces with tabs in the template.
- 13:51, 6 July 2011 diff hist +216 iRefScape plugin menu →iRefScape search with batch file: Formatted the note and added information about viewing the new attributes.
- 13:22, 6 July 2011 diff hist +170 iRefScape plugin menu →Attributes in batch files: Fixed the list, added a format template.
- 13:19, 6 July 2011 diff hist +352 iRefScape plugin menu →Attribute batch file: Tidied up.
- 14:17, 5 July 2011 diff hist +130 iRefScape plugin menu →iRefScape search with batch file: Reworded, tidied.
- 13:09, 5 July 2011 diff hist +12 iRefScape plugin menu →iRefScape user searchable index: Various fixes.
- 17:17, 4 July 2011 diff hist +46 iRefScape plugin menu →iRefScape user searchable index: Tidied up formatting.
- 17:14, 4 July 2011 diff hist +927 iRefScape plugin menu Added a description of the grouping operations.
- 16:57, 4 July 2011 diff hist -539 iRefScape plugin menu Put the user variables section into the "Search tools" menu. Moved the batch file searching section. Various formatting and stylistic edits, plus link fixes.
- 16:23, 4 July 2011 diff hist -1 m iRefScape 1.0 →Toggling Edges: Remove vertical space.
- 16:22, 4 July 2011 diff hist -108 iRefScape 1.0 →Installation: More tidying.
- 16:20, 4 July 2011 diff hist +28 iRefScape 1.0 →Tested systems: Tidied up.
- 16:05, 4 July 2011 diff hist +2,018 iRefScape 1.0 →Advanced search options: Added some brief descriptions of the panels.
- 13:32, 4 July 2011 diff hist +16 MediaWiki:Sidebar Attempt to add main page.
- 13:31, 4 July 2011 diff hist +5 MediaWiki:Sidebar Test modified navigation.
- 18:10, 1 July 2011 diff hist +628 iRefIndex Build Process →Validating the Results from iRef_PSI_XML2RDBMS: Added BIND Translation validation techniques.
- 15:43, 30 June 2011 diff hist -22 iRefIndex Build Process →Potential Problems: Removed version-specific reference.
- 15:42, 30 June 2011 diff hist +14 iRefIndex Build Process →Potential Problems: Tidied up the formatting.
- 18:21, 29 June 2011 diff hist +308 iRefIndex Build Process →Creating taxid2name table: Added unpacking commands.
- 18:10, 29 June 2011 diff hist +858 iRefIndex Build Process Added an MPIDB section.
- 18:01, 29 June 2011 diff hist -216 Sources and Issues Next Release →MPIDB: Updated the MPIDB MITAB notes.
- 15:37, 29 June 2011 diff hist +69 iRefIndex MITAB Mapping Added link to external specification. current
- 16:55, 27 June 2011 diff hist -53 iRefScape Test Cases 1.0 →Search cases: Updated the OMIM case.
- 11:28, 27 June 2011 diff hist +136 iRefIndex Build Process →Manual loading of data: Fixed SEGUID notes.
- 18:36, 24 June 2011 diff hist +188 iRefScape Test Cases 1.0 →Search cases: Added dig_title search result.
- 12:06, 24 June 2011 diff hist +348 iRefIndex Build Process →Recreate SEGUID: Updated the note and information about files.
- 11:31, 23 June 2011 diff hist +193 iRefIndex Build Process →Clone seguid: Formatted and tidied up, adding some database commands.
- 11:05, 23 June 2011 diff hist +112 m iRefIndex Build Process →Create tables: Reformatted, tidied up.
- 15:58, 21 June 2011 diff hist +1,130 iRefIndex Output and Statistics Changed the MITAB generation process to include SQL script usage.
- 15:07, 21 June 2011 diff hist +6 iRefIndex Output and Statistics →Running PSI_MI_TAB_Maker: Added program arguments.
- 15:05, 21 June 2011 diff hist -781 iRefIndex Output and Statistics →Building PSI_MI_TAB_Maker: Parameterised the program, removing source code modifications.
- 14:09, 21 June 2011 diff hist -5 iRefIndex Output and Statistics →Creating a Mapping Wiki Page: Fixed CVS checkout.
- 15:51, 20 June 2011 diff hist +184 iRefIndex Build Process →Running BioPSI_Suplimenter (continued): Extended workaround.
- 12:27, 20 June 2011 diff hist +81 iRefIndex Build Process →Creating taxid2name table: Tidied formatting.
- 12:03, 17 June 2011 diff hist +5 m iRefIndex Build Process →Running BioPSI_Suplimenter: Changed the .jar location.
- 13:53, 16 June 2011 diff hist +4 m Sources and Issues Next Release →Interaction related resources: Fixed name.
- 12:28, 16 June 2011 diff hist +459 iRefIndex Build Process →Known Issues: Added BIND Translation fix.
- 12:23, 16 June 2011 diff hist +235 Sources and Issues Next Release Added BIND Translation issue (which was probably already reported).
- 16:33, 15 June 2011 diff hist +55 Sources and Issues Next Release →Sequence related resources (not updated yet): Added release numbers and dates.
- 09:25, 15 June 2011 diff hist -1,653 iRefIndex MITAB Mapping Removed lower table, added category tag.
- 17:03, 14 June 2011 diff hist +115 Sources and Issues Next Release Added redirect page note.
- 17:00, 14 June 2011 diff hist 0 m Sources iRefIndex Fixed version numbering.
- 17:00, 14 June 2011 diff hist +35 N Sources iRefIndex Added a general sources page.
- 16:58, 14 June 2011 diff hist -1,323 iRefIndex Build Process →Manual Downloads: Removed UniProt which is now downloaded by FTPtransfer. Added general sources link.
- 16:54, 14 June 2011 diff hist +939 iRefIndex Build Process →Manual Downloads: Tidied, added MatrixDB.
- 16:54, 14 June 2011 diff hist +3 Sources and Issues Next Release →Interaction related resources: Updated. Fixed the HPRD link again. Changed date formats.
- 16:36, 14 June 2011 diff hist +862 iRefIndex Build Process →MIPS: Added MPIDB section.
- 16:30, 14 June 2011 diff hist +101 m iRefIndex Build Process →InnateDB: Added note.
- 15:58, 14 June 2011 diff hist +274 iRefIndex Build Process →BIND Translation: Updated URLs, commands.
- 13:14, 11 June 2011 diff hist 0 m iRefIndex Build Process →Build Dependencies: Updated ant version.
- 18:18, 10 June 2011 diff hist +247 iRefIndex MITAB Mapping Attempt to incorporate summary table details into the mapping table. Not sure about the interactionType, however.
- 15:06, 10 June 2011 diff hist +82 iRefIndex MITAB Mapping Added int_xref.dbid for interactionType, interactionIdentifiers.
- 14:15, 10 June 2011 diff hist +2,273 N iRefIndex MITAB Mapping Attempt to document the MITAB format in terms of the iRefIndex schema.
- 11:39, 10 June 2011 diff hist +53 iRefIndex Development →Adding Sources to iRefIndex: Added a link to a new document.
- 12:21, 6 June 2011 diff hist +52 m Sources and Issues Next Release →Interaction related resources: Fixed table.
- 22:37, 30 May 2011 diff hist +36 iRefScape 1.0 →Installation: Updated link to point to new page.
- 22:35, 30 May 2011 diff hist +15,776 N iRefScape 1.0 Installation Make a new version of the page. Added Debian/Ubuntu Java packaging notes.
- 22:28, 30 May 2011 diff hist -27 m iRefScape 0.9 →Installation: Change the link to be local.
- 14:36, 30 May 2011 diff hist +10 m MBV3070 Tidy up.
- 00:59, 22 May 2011 diff hist +210 N irefindex:About Created page with "See the [http://www.biotek.uio.no/research/donaldson_group/ group's page] on the main [http://www.biotek.uio.no/ Biotechnology Centre of Oslo site] to find out more about the gro…"
- 14:39, 20 May 2011 diff hist +579 iRefScape Test Cases 1.0 Added the dig_title test result. Started an export tests section.
- 13:17, 19 May 2011 diff hist +2 Bioscape Changed the link for now.
- 16:03, 18 May 2011 diff hist -10 iRefScape Test Cases 1.0 →Search cases: Updated some of the example-related test cases.
- 14:52, 18 May 2011 diff hist -12 m Canonicalization →UniProt: Made use of numbered lists.
- 14:51, 18 May 2011 diff hist -44 m iRefScape 1.0 →Use canonical expansion: Use a local link.
- 14:50, 18 May 2011 diff hist +1 m iRefScape 1.0 →Installation: Fixed link.
- 13:51, 18 May 2011 diff hist +3 iRefScape Test Cases 1.0 →List of GeneIDs to test the new caonical expansion: Fixed spelling.
- 13:50, 18 May 2011 diff hist -10 iRefScape Test Cases 1.0 →Search cases: Fixed table.
- 13:49, 18 May 2011 diff hist +452 iRefScape Test Cases 1.0 Migrated more tests. Tidied up the untested area details.
- 16:28, 16 May 2011 diff hist +378 irefindex:Privacy policy Updated to describe what the "share" button does. current
- 14:00, 16 May 2011 diff hist -128 iRefScape Test Cases 1.0 Migrated more tests.
- 17:25, 13 May 2011 diff hist +7 iRefScape Test Cases 1.0 Migrated more tests.
- 14:26, 13 May 2011 diff hist +399 iRefScape Test Cases 1.0 Migrated more tests.
- 12:58, 13 May 2011 diff hist -371 iRefScape Test Cases 1.0 Migrated more tests.
- 16:48, 12 May 2011 diff hist +109 iRefScape Test Cases 1.0 →Search cases: Added results and made expected outcomes clearer.
- 15:27, 12 May 2011 diff hist +311 iRefScape Test Cases 1.0 More conversions to tabular form.
- 16:56, 11 May 2011 diff hist +1,109 iRefScape Test Cases 1.0 →Search cases: Converted more tests to tabular form, added results, made invalid input tests separate.
- 11:57, 11 May 2011 diff hist +549 iRefScape Test Cases 1.0 Switch to tables of test cases.
- 14:38, 10 May 2011 diff hist +392 iRefScape 0.8 Added compatibility table and remarks.
- 14:35, 10 May 2011 diff hist +118 iRefScape 1.0 Fixed some version numbers; added a link to the latest release page.
- 14:34, 10 May 2011 diff hist +354 iRefScape 0.9 Added compatibility table and remarks.
- 14:26, 10 May 2011 diff hist +131 iRefScape 1.0 Tidied up. Moved away from x-suffixed version numbers.
- 13:31, 9 May 2011 diff hist -679 iRefScape Test Cases 1.0 →Test case name: geneSymbol 1: Tried to test this.
- 11:30, 9 May 2011 diff hist 0 m Donaldson Group →The Donaldson Group at the Biotechnology Centre of Oslo: Attempt to move the share button.
- 11:25, 9 May 2011 diff hist -1 m iRefIndex Attempt to move the share button.
- 17:11, 3 May 2011 diff hist +15 iRefIndex Added "like" button.
- 16:56, 3 May 2011 diff hist +13 m Donaldson Group Moved the "like" button down since it now isn't being floated.
- 14:49, 3 May 2011 diff hist 0 m Donaldson Group →The Donaldson Group at the Biotechnology Centre of Oslo: Move the button.
- 14:40, 3 May 2011 diff hist 0 m Donaldson Group Experiment with a smaller "like" box, moved to the top of the page.
- 14:05, 3 May 2011 diff hist +207 N irefindex:Privacy policy Added privacy policy.
- 13:23, 3 May 2011 diff hist -80 Donaldson Group →Contact: Try out the Facebook like button.
- 11:27, 3 May 2011 diff hist +84 m Donaldson Group Added a comment to get bookmarking icons to appear.
- 11:06, 3 May 2011 diff hist +15 m Donaldson Group Test the ShareThis extension.
- 12:34, 2 May 2011 diff hist +505 iRefScape Test Cases 1.0 →Test case name: geneID 1: Added note about the isoform search.
- 16:15, 29 April 2011 diff hist 0 m iRefScape Test Cases 1.0 →Test case name: UniProt_ID 1: Minor formatting change.
- 16:14, 29 April 2011 diff hist -337 iRefScape Test Cases 1.0 →Test case name: geneID 1: Updated for 1.0.
- 13:40, 28 April 2011 diff hist -52 iRefScape Test Cases 1.0 →Test case name: UniProt_ID 1: Reviewed the test.
- 13:39, 27 April 2011 diff hist +42 N iRefScape A redirect to the latest stable version of the page.
- 16:32, 19 April 2011 diff hist +140 MediaWiki:Sidebar Added PSICQUIC and PSISCORE usage links.
- 11:42, 8 April 2011 diff hist +2,552 iRefIndex Output and Statistics →PSI-MI Controlled Vocabulary Mapping: Added Wiki page construction notes.
- 12:50, 7 April 2011 diff hist -1 Mapping of terms to MI term ids - iRefIndex 8.0 Fixed numbered list. current
- 12:50, 7 April 2011 diff hist -3 m Mapping of terms to MI term ids - iRefIndex 6.0 Changed numbered list. current
- 12:49, 7 April 2011 diff hist -363 Mapping of terms to MI term ids - iRefIndex 8.0 →Interaction Detection Method: Edited according to the MITAB data.
- 12:42, 7 April 2011 diff hist -33 Mapping of terms to MI term ids - iRefIndex 8.0 →Interaction Type: Edits based on looking at the MITAB data.
- 12:36, 7 April 2011 diff hist +26,878 N Mapping of terms to MI term ids - iRefIndex 8.0 Added initial transcription of the spreadsheet.
- 14:10, 6 April 2011 diff hist 0 MediaWiki:Sidebar Use asclepius for now.
- 14:10, 6 April 2011 diff hist +44 MediaWiki:Sidebar Try with absolute URLs.
- 14:09, 6 April 2011 diff hist +4 MediaWiki:Sidebar Try with relative URLs.
- 14:08, 6 April 2011 diff hist -32 MediaWiki:Sidebar Attempted to add links to other services, removing redundant links.
- 12:18, 5 April 2011 diff hist +21 PSICQUIC Web Services for iRefIndex Changed host name.
- 15:34, 30 March 2011 diff hist +107 PSICQUIC Web Services for iRefIndex Added PSISCORE URLs. Minor formatting changes.
- 10:52, 29 March 2011 diff hist -2 m Donaldson Group →Courses: Test edit.
- 09:45, 28 March 2011 diff hist +17 README MITAB2.6 for iRefIndex 8.0 →Column number: 15 (confidence): Fixed formatting.
- 17:08, 21 March 2011 diff hist +134 DrugBank MITAB2.6 File Format →Format Summary: Updated the taxonomy description and adjusted the formatting.
- 17:04, 21 March 2011 diff hist -232 Donaldson Group →Local Seminar Series: Removed specific seminar details and updated links.
- 16:51, 21 March 2011 diff hist -52 m Bioseminar Removed specific details of the seminars.
- 18:39, 17 March 2011 diff hist +606 iRefIndex MITAB2.6 Parser →Notes on the Populated Database: Added interaction RIG tables and some notes about interactor identifiers.
- 18:31, 17 March 2011 diff hist 0 N File:mitab-2011-03-17.tar.bz2 current
- 18:30, 17 March 2011 diff hist 0 iRefIndex MITAB2.6 Parser →Obtaining the MITAB Parser: Added new snapshot.
- 15:44, 11 March 2011 diff hist +3 README MITAB2.6 for iRefIndex 8.0 →Column number: 52 (imex_id): Fixed example.
- 14:26, 23 February 2011 diff hist +8 iRefWeb LinkOut Generator →Obtaining the Generator: Fixed filename. current
- 14:25, 23 February 2011 diff hist +57 N File:iRefWeb-LinkOut-2011-02-23.tar.bz2 The 2011-02-23 snapshot of the iRefWeb LinkOut generator. current
- 14:24, 23 February 2011 diff hist -9 iRefWeb LinkOut Generator →Obtaining the Generator: Changed filename.
- 14:19, 23 February 2011 diff hist +1,328 N iRefWeb LinkOut Generator Added a page about iRefWeb and LinkOut.
- 14:13, 23 February 2011 diff hist -335 iRefIndex MITAB2.6 Parser →Obtaining the MITAB Parser: Reference an uploaded file.
- 14:08, 23 February 2011 diff hist +54 N File:mitab-2011-02-23.tar.bz2 The 2011-02-23 snapshot of the iRefIndex MITAB parser. current
- 17:52, 22 February 2011 diff hist +1,399 DrugBank MITAB2.6 File Format Changed DrugBank to drugbank and InChIKey to inchikey for general consistency. Added the remaining columns.
- 13:47, 15 February 2011 diff hist -71 m iRefIndex Videos Reverted edits by PaulBoddie (Talk) to last revision by Ian.donaldson current
- 13:23, 15 February 2011 diff hist +71 iRefIndex Videos Test with MediawikiPlayer extension.
- 13:25, 11 February 2011 diff hist +113 DrugBank MITAB2.6 File Format →Format Summary: Added biological role A.
- 14:10, 8 February 2011 diff hist +1,298 DrugBank MITAB2.6 File Format →Format Summary: Added columns.
- 18:25, 31 January 2011 diff hist +203 DrugBank MITAB2.6 File Format →Format Summary: Fixed protein alias source, added an example column.
- 17:47, 31 January 2011 diff hist +1,111 DrugBank MITAB2.6 File Format →Format Summary: Added sources, more fields.
- 19:05, 27 January 2011 diff hist +672 DrugBank MITAB2.6 File Format Added field descriptions.
- 16:08, 27 January 2011 diff hist +1,033 N DrugBank MITAB2.6 File Format Added initial description.
- 18:20, 17 January 2011 diff hist +129 iRefIndex Maintenance Added some resources of peripheral interest.
- 16:37, 21 December 2010 diff hist +104 iRefIndex Build Process →Recreate SEGUID: Added note.
- 14:41, 21 December 2010 diff hist +493 iRefIndex Build Process →Running BioPSI_Suplimenter (continued): Added SEGUID Manipulator.
- 17:13, 1 December 2010 diff hist +89 iRefIndex Build Process →Running BioPSI_Suplimenter (continued): Added Canonical_Mapper.
- 17:04, 1 December 2010 diff hist -5 m iRefIndex Build Process →Running BioPSI_Suplimenter: Change .jar path.
- 10:07, 30 November 2010 diff hist +128 iRefIndex Output and Statistics →Running PSI_MI_TAB_Maker: Added taxid2name statements.
- 16:46, 29 November 2010 diff hist +97 iRefIndex Release Process →Testing the Output: Added link to new page.
- 16:50, 11 November 2010 diff hist +111 iRefIndex Build Process →Running BioPSI_Suplimenter (continued): Extended workaround.
- 15:42, 5 November 2010 diff hist +936 iRefIndex Build Process →ROG_ass + RIG_fill+ make Cy: Added Eutils-related notes.
- 17:06, 2 November 2010 diff hist +1 iRefIndex MITAB2.6 Parser →Prerequisites: Updated versions.
- 15:00, 28 October 2010 diff hist +1,289 iRefIndex Build Process →Validating the Results from iRef_PSI_XML2RDBMS: Added notes about problems with the parsed data.
- 12:37, 28 October 2010 diff hist +268 iRefIndex Build Process →Validating the Results from iRef_PSI_XML2RDBMS: Added source2object queries.
- 13:44, 27 October 2010 diff hist +192 README iRefIndex expanded MITAB proposal Added deprecation note. current
- 13:35, 27 October 2010 diff hist +27 m iRefIndex MITAB2.6 Parser Minor formatting changes.
- 13:33, 27 October 2010 diff hist +254 iRefIndex MITAB2.5 Parser Added status note.
- 13:29, 27 October 2010 diff hist 0 m README iRefIndex MITAB experiment proposal for 7.0 moved README MITAB experiment proposal for iRefIndex 7.0 to README iRefIndex MITAB experiment proposal for 7.0: Fixed the name of the page. current
- 13:29, 27 October 2010 diff hist +64 N README MITAB experiment proposal for iRefIndex 7.0 moved README MITAB experiment proposal for iRefIndex 7.0 to README iRefIndex MITAB experiment proposal for 7.0: Fixed the name of the page. current
- 13:28, 27 October 2010 diff hist 0 m README iRefIndex MITAB experiment proposal for 7.0 moved README iRefIndex experiment MITAB 7.0 to README MITAB experiment proposal for iRefIndex 7.0: The page describes an obsolete format.
- 13:28, 27 October 2010 diff hist +64 N README iRefIndex experiment MITAB 7.0 moved README iRefIndex experiment MITAB 7.0 to README MITAB experiment proposal for iRefIndex 7.0: The page describes an obsolete format. current
- 13:27, 27 October 2010 diff hist +435 README iRefIndex MITAB experiment proposal for 7.0 Added deprecation note.
- 15:44, 25 October 2010 diff hist +13 README MITAB2.6 for iRefIndex 7.0 →Column number: 1 (uidA): Minor formatting edit. current
- 15:42, 25 October 2010 diff hist -427 iRefIndex MITAB2.6 Parser Updated the description of the software.
- 15:24, 25 October 2010 diff hist +12 iRefIndex Build Process →Validating the Results from iRef_PSI_XML2RDBMS: Added missing name columns to certain queries.
- 15:14, 21 October 2010 diff hist +1,016 iRefIndex Build Process →Validating the Results from iRef_PSI_XML2RDBMS: Added undefined value queries.
- 12:20, 19 October 2010 diff hist +238 README iRefIndex MITAB2.6 proposal for 7.0 Added status note, updated release details. current
- 11:55, 19 October 2010 diff hist 0 m README iRefIndex MITAB2.6 proposal for 7.0 moved README iRefIndex MITAB2.6 7.0 to README iRefIndex MITAB2.6 proposal for 7.0: This is no longer relevant.
- 11:55, 19 October 2010 diff hist +56 N README iRefIndex MITAB2.6 7.0 moved README iRefIndex MITAB2.6 7.0 to README iRefIndex MITAB2.6 proposal for 7.0: This is no longer relevant. current
- 17:38, 18 October 2010 diff hist +641 README MITAB2.6 for iRefIndex 7.0 Various formatting and wording changes and fixes.
- 14:31, 15 October 2010 diff hist +457 iRefIndex Development →Defining the Database Identifier: Fixed the origin of identifiers.
- 13:24, 15 October 2010 diff hist +984 iRefIndex Development Added database identifier definition.
- 19:00, 14 October 2010 diff hist +77 README MITAB2.6 for iRefIndex 7.0 →Representation of interactions: Fixed formatting, list numbering, some wording.
- 18:37, 14 October 2010 diff hist +565 iRefIndex Build Process →Known Issues: Added BioGRID fix.
- 14:53, 14 October 2010 diff hist -271 iRefIndex Build Process →Known Issues: Switched back to the PSI-MI XML 2.5 version of BioGRID.
- 14:52, 14 October 2010 diff hist +5 Sources iRefIndex 8.0 →Interaction related resources: Fixed BioGRID reference.
- 13:27, 14 October 2010 diff hist -3 iRefIndex Build Process →Running the Program: Changed the execution method.
- 13:10, 14 October 2010 diff hist +497 iRefIndex Build Process →Known Issues: Updated the issues with observations from iRefIndex 8.0.
- 12:23, 14 October 2010 diff hist +161 iRefIndex Build Process →Running iRef_PSI_XML2RDBMS: Changed the formatting, added new data sources, changed source removal (adding, not removing # characters).
- 14:10, 13 October 2010 diff hist +161 iRefIndex Build Process →MIPS: Introduced a separate MPACT directory.
- 14:02, 13 October 2010 diff hist 0 iRefIndex Build Process Changed BioGrid to BioGRID.
- 10:22, 13 October 2010 diff hist +364 iRefIndex Build Process →Creating the Database: Added more restrictive grant statements.
- 17:03, 12 October 2010 diff hist +8 m iRefIndex Build Process →Validating the Results from StaxPSIXML: Changed the module name.
- 17:01, 12 October 2010 diff hist +2,376 iRefIndex Development →Adapting an Existing Mapper File: Added notes about different data origins.
- 16:37, 12 October 2010 diff hist +18,772 iRefIndex Development →Evaluating the Data: Updated the data structure output. Added MatrixDB.
- 14:37, 11 October 2010 diff hist +4,929 iRefIndex Development Added notes about adapting mapper files.
- 11:33, 11 October 2010 diff hist -1,991 iRefIndex Development →Reviewing Mapper Files: Updated output.
- 14:11, 8 October 2010 diff hist +91 iRefIndex Development →Evaluating the Data: Added InnateDB observations.
- 18:11, 7 October 2010 diff hist +8,416 iRefIndex Development →Adding Sources to iRefIndex: Updated the script invocation and added an explanation of the output.
- 16:10, 1 October 2010 diff hist +5,155 iRefIndex Development →Adding Sources to iRefIndex: Added description of XML element path analysis.
- 14:11, 1 October 2010 diff hist +319 iRefIndex Build Process →Running StaxPSIXML: Introduced iRef_PSI_XML2RDBMS references and described the convenience script.
- 14:01, 1 October 2010 diff hist -55 iRefIndex Build Process →Building StaxPSIXML: Introduced references to iRef_PSI_XML2RDBMS.
- 16:29, 30 September 2010 diff hist 0 m iRefIndex Build Process →BioGrid: Capitalisation changes.
- 14:04, 30 September 2010 diff hist +643 Gene Ontology similarity measurement Added concept comparison notes.
- 13:22, 30 September 2010 diff hist +182 iRefIndex Build Process →Clone seguid: Added a note about updating from a newer seguidannotation file. Modified the wording.
- 17:06, 28 September 2010 diff hist +3,367 N Gene Ontology similarity measurement Some initial notes.
- 16:21, 28 September 2010 diff hist +23 m DiG: Disease groups/Bioscape Notes Added category. current
- 16:15, 24 September 2010 diff hist +16 m iRefIndex Build Process →Running BioPSI_Suplimenter: Qualify the initial statement.
- 16:14, 24 September 2010 diff hist +195 iRefIndex Build Process →Manual loading of data: Added maintenance note.
- 15:54, 23 September 2010 diff hist +19 Sources iRefIndex 8.0 Added InnateDB details, removed OPHID.
- 15:54, 23 September 2010 diff hist +482 iRefIndex Build Process →Manual Downloads: Added InnateDB details.
- 15:32, 23 September 2010 diff hist +72 Sources iRefIndex 8.0 Updated MINT, Intact (probably unchanged, timestamp adjusted), NCBI resources.
- 16:08, 21 September 2010 diff hist +539 iRefIndex Build Process →Running SaxValidator: Added xmllint notes.
- 13:08, 21 September 2010 diff hist -16 iRefIndex Build Process →Running BioPSI_Suplimenter: Tidied the link to the previous section.
- 12:56, 21 September 2010 diff hist -16 Sources iRefIndex 8.0 →Sequence related resources: Changed SEGUID details, although the actual contents of seguidannotation is unchanged from the previous release.
- 11:04, 21 September 2010 diff hist +99 iRefIndex Build Process Updated the sources link and added a note about SEGUID.
- 16:55, 20 September 2010 diff hist +111 Sources iRefIndex 8.0 →Sequence related resources: Updated UniProt details.
- 16:16, 20 September 2010 diff hist +987 iRefIndex Build Process Added Ant installation information.
- 15:57, 20 September 2010 diff hist -99 iRefIndex Build Process Tidied formatting.
- 15:51, 20 September 2010 diff hist -43 iRefIndex Build Process →Building FTPtransfer: Tidied formatting.
- 11:39, 15 September 2010 diff hist +167 Sources iRefIndex 8.0 →Interaction related resources: Updated DIP, added MatrixDB, MPIDB, InnateDB details.
- 08:55, 15 September 2010 diff hist -71 m Bioinformatics course Removed weird "skype highlighting" text.
- 16:49, 14 September 2010 diff hist -4 Sources iRefIndex 8.0 →Interaction related resources: Updated I2D details.
- 16:08, 14 September 2010 diff hist +1 Sources iRefIndex 8.0 →Interaction related resources: Updated HPRD, removing the trailing / which upsets their site.
- 12:54, 14 September 2010 diff hist +10 Sources iRefIndex 8.0 →Interaction related resources: Tidied, fixed and confirmed BIND Translation details. Updated BioGRID details.
- 12:00, 14 September 2010 diff hist +47 iRefIndex Build Process →BIND Translation: Updated the download information.
- 09:32, 6 September 2010 diff hist -71 m Bioinformatics course Removed weird "skype highlighting" text.
- 13:46, 23 August 2010 diff hist -11 iRefIndex →Contact: Fixed link to new Biotek site.
- 14:31, 5 August 2010 diff hist +3 m README MITAB2.6 for iRefIndex 7.0 →Understanding the iRefIndex MITAB format: Minor fixes and formatting changes.
- 16:58, 15 July 2010 diff hist -356 Bioseminar Updated the page to give details of the new arrangements.
- 16:48, 15 July 2010 diff hist +5,192 Bioscape Result Assessment Added notes about disambiguation using unambiguous/reliable gene mentions. current
- 13:49, 14 July 2010 diff hist -92 m Bioscape Issues and Tasks Moved note to a separate page. current
- 13:48, 14 July 2010 diff hist -92 m Bioscape Development Moved note to a separate page. current
- 13:48, 14 July 2010 diff hist +22 m Displaying Bioscape Search Results Added status note. current
- 13:47, 14 July 2010 diff hist +22 m Bioscape Web Resources Added status note. current
- 13:47, 14 July 2010 diff hist +22 m Bioscape Result Assessment Added status note.
- 13:46, 14 July 2010 diff hist +22 m Bioscape Searching Techniques Added status note. current
- 13:46, 14 July 2010 diff hist +22 m Bioscape Searching Added status note. current
- 13:45, 14 July 2010 diff hist +22 m Bioscape Tokenisation Added status note. current
- 13:45, 14 July 2010 diff hist +71 Bioscape Indexing Added status note. Clarified the status of the indexing solutions used in Bioscape. current
- 13:44, 14 July 2010 diff hist +22 m Bioscape Scoring Techniques Added status note. current
- 13:43, 14 July 2010 diff hist -92 m Bioscape Methods Moved note to a separate page. current
- 13:42, 14 July 2010 diff hist +22 m Bioscape Data Types Added status note. current
- 13:41, 14 July 2010 diff hist +141 Supported Data Sources Added status note, changed note appearances, added GeneRIF. current
- 13:39, 14 July 2010 diff hist +22 m Bioscape Data Sources Added status note. current
- 13:39, 14 July 2010 diff hist -92 m Bioscape Distribution Moved note to a separate page. current
- 13:38, 14 July 2010 diff hist +22 m Bioscape Workflow Added status note. current
- 13:38, 14 July 2010 diff hist +22 m Bioscape Configuration Added status note. current
- 13:37, 14 July 2010 diff hist -145 Bioscape Dependencies Moved note to a separate page. Removed Lucene from the dependencies. current
- 13:36, 14 July 2010 diff hist -92 m Bioscape Installation Moved note to a separate page. current
- 13:36, 14 July 2010 diff hist -92 m Bioscape Manual Moved note to a separate page. current
- 13:35, 14 July 2010 diff hist +103 N Bioscape Status Added a common note for inclusion in other pages. current
- 15:34, 9 July 2010 diff hist +6,161 N iRefIndex MITAB2.6 Parser Attempted to make a page corresponding to the revised MITAB format.
- 16:17, 8 July 2010 diff hist +485 README iRefIndex MITAB2.6 proposal for 7.0 →Understanding the iRefIndex MITAB format: Added some notes about finding different group sizes.
- 15:27, 8 July 2010 diff hist +2,195 README iRefIndex MITAB2.6 proposal for 7.0 →Understanding the iRefIndex MITAB format: Introduced sections. Added a description of the canonical interaction information.
- 18:12, 7 July 2010 diff hist -151 README iRefIndex MITAB2.6 proposal for 7.0 →Description: Updated version references.
- 18:10, 7 July 2010 diff hist +207 README iRefIndex MITAB2.6 proposal for 7.0 →Understanding the iRefIndex MITAB format: Updated the table.
- 17:44, 7 July 2010 diff hist -2,717 README iRefIndex MITAB2.6 proposal for 7.0 Removed columns 41 and 42. Renumbered the columns and references to columns.
- 17:03, 7 July 2010 diff hist -1,168 README iRefIndex MITAB2.6 proposal for 7.0 Removed columns 47 (replacing 35), 53.
- 16:58, 7 July 2010 diff hist +231 README iRefIndex MITAB2.6 proposal for 7.0 →Column number: 52 (numParticipants): Added a description of how this value can be different from the number of distinct interactors.
- 16:56, 7 July 2010 diff hist -54 m README iRefIndex MITAB2.6 proposal for 7.0 →Column number: 51 (edgetype): Removed notes.
- 16:54, 7 July 2010 diff hist -35 README iRefIndex MITAB2.6 proposal for 7.0 →Column number: 44 (entrezGeneIds_B): Replaced with irogB.
- 16:54, 7 July 2010 diff hist -115 README iRefIndex MITAB2.6 proposal for 7.0 →Column number: 43 (entrezGeneIds_A): Replaced with irogA.
- 16:48, 7 July 2010 diff hist +14 README iRefIndex MITAB2.6 proposal for 7.0 →Column number: 39 (Final_ROGID_A): Column change.
- 16:47, 7 July 2010 diff hist +4 m README iRefIndex MITAB2.6 proposal for 7.0 →Column number: 36 (Negative): Added horizontal rule.
- 16:46, 7 July 2010 diff hist -278 README iRefIndex MITAB2.6 proposal for 7.0 →Column number: 34 (Checksum_B): Replaced with content from After_C13N_ROGID_B in column 42.
- 16:44, 7 July 2010 diff hist +2,196 README iRefIndex MITAB2.6 proposal for 7.0 →Column number: 33 (Checksum_A): Replaced the content with the After_ROGID_A content previously in column 41.
- 16:30, 7 July 2010 diff hist -1 README iRefIndex MITAB2.6 proposal for 7.0 →Column number: 1 (uidA): Fixed column type.
- 16:30, 7 July 2010 diff hist -29 README iRefIndex MITAB2.6 proposal for 7.0 →Column number: 2 (uidB): Changed the example to reflect the updated nature of the field.
- 16:29, 7 July 2010 diff hist -795 README iRefIndex MITAB2.6 proposal for 7.0 →Column number: 1 (uidA): Changed the nature of the identifier, as discussed.
- 16:27, 7 July 2010 diff hist -3 README iRefIndex MITAB2.6 proposal for 7.0 →Understanding the iRefIndex MITAB format: Fixes in wording, formatting.
- 14:57, 6 July 2010 diff hist -10 README iRefIndex MITAB2.6 proposal for 7.0 →Understanding the iRefIndex MITAB format: Fixed Final_ROGID names.
- 14:57, 6 July 2010 diff hist -5 README iRefIndex MITAB2.6 proposal for 7.0 →Column number: 40 (Final_C13N_ROGID_B): Fixed name, referenced column number.
- 14:56, 6 July 2010 diff hist -5 README iRefIndex MITAB2.6 proposal for 7.0 →Column number: 39 (Final_C13N_ROGID_A): Fixed name.
- 11:34, 5 July 2010 diff hist +33 README iRefIndex MITAB2.6 proposal for 7.0 →Column number: 11 (taxb): Fixed column type and description.
- 11:33, 5 July 2010 diff hist +33 README iRefIndex MITAB2.6 proposal for 7.0 →Column number: 10 (taxa): Fixed the column type and description.
- 11:18, 5 July 2010 diff hist -91 README iRefIndex MITAB2.6 proposal for 7.0 →Column number: 16 (expansion): Fixed internal link.
- 10:52, 5 July 2010 diff hist +90 README iRefIndex MITAB2.6 proposal for 7.0 →Understanding the iRefIndex MITAB format: Updated the columns in the table.
- 10:13, 5 July 2010 diff hist +15 README iRefIndex MITAB2.6 proposal for 7.0 →Column number: 41 (After_C13N_ROGID_A): Tidying, name and column updates.
- 10:03, 5 July 2010 diff hist -4 README iRefIndex MITAB2.6 proposal for 7.0 →Column number: 48 (C13N_rig): Tidied up naming.
- 10:01, 5 July 2010 diff hist 0 README iRefIndex MITAB2.6 proposal for 7.0 →Column number: 52 (numParticipants): Fixed edgetype column number.
- 10:00, 5 July 2010 diff hist +100 README iRefIndex MITAB2.6 proposal for 7.0 →Column number: 53 (interaction_name): Tidied up. Expanded the "to do" note.
- 08:35, 5 July 2010 diff hist -68 README iRefIndex MITAB2.6 proposal for 7.0 →Column number: 51 (edgetype): Fixed link to refer within the same document.
- 16:46, 2 July 2010 diff hist +226 README iRefIndex MITAB2.6 proposal for 7.0 →Column number: 37 (OriginalReferenceA): Added a note about the relationship between this column and the old altA column.
- 15:59, 2 July 2010 diff hist -129 m README iRefIndex MITAB2.6 proposal for 7.0 →Column number: 46 (MappingScoreB): Removed Sabry's marker.
- 15:58, 2 July 2010 diff hist +34 README iRefIndex MITAB2.6 proposal for 7.0 →Column number: 45 (MappingScoreA): Merged Sabry's comment and tidied.
- 15:50, 2 July 2010 diff hist +202 README iRefIndex MITAB2.6 proposal for 7.0 →Column number: 43 (entrezGeneIds_A): Added a more complete change note.
- 14:53, 2 July 2010 diff hist +183 README iRefIndex MITAB2.6 proposal for 7.0 →Column number: 5 (aliasA): Minor formatting, wording changes.
- 14:36, 2 July 2010 diff hist -2 m README iRefIndex MITAB2.6 proposal for 7.0 →Column number: 32 (Update_date): Removed empty lines.
- 14:35, 2 July 2010 diff hist -13 README iRefIndex MITAB2.6 proposal for 7.0 →Column number: 29 (Host_organism_taxid): Various wording, formatting changes.
- 14:32, 2 July 2010 diff hist +45 README iRefIndex MITAB2.6 proposal for 7.0 →Column number: 26 (Annotations_A): Minor formatting changes.
- 14:05, 2 July 2010 diff hist +35 README iRefIndex MITAB2.6 proposal for 7.0 →Column number: 16 (expansion): Minor formatting changes.
- 14:02, 2 July 2010 diff hist +7 m README iRefIndex MITAB2.6 proposal for 7.0 →Column number: 23 (xrefs_A): Minor formatting change.
- 13:57, 2 July 2010 diff hist -54 README iRefIndex MITAB2.6 proposal for 7.0 →Column number: 19 (experimental_role_A): Merged Sabry's comment.
- 13:56, 2 July 2010 diff hist +1 m README iRefIndex MITAB2.6 proposal for 7.0 →Column number: 18 (biological_role_B): Minor formatting change.
- 13:56, 2 July 2010 diff hist -43 README iRefIndex MITAB2.6 proposal for 7.0 →Column number: 17 (biological_role_A): Minor formatting changes. Merged Sabry's comment.
- 13:53, 2 July 2010 diff hist +1 README iRefIndex MITAB2.6 proposal for 7.0 →Column number: 13 (sourcedb): Minor naming change.
- 13:52, 2 July 2010 diff hist +2 README iRefIndex MITAB2.6 proposal for 7.0 →Column number: 14 (interactionIdentifier): Minor formatting, wording changes.
- 13:49, 2 July 2010 diff hist +133 README iRefIndex MITAB2.6 proposal for 7.0 →Column number: 14 (interactionIdentifier): Minor formatting, wording changes.
- 13:46, 2 July 2010 diff hist +25 README iRefIndex MITAB2.6 proposal for 7.0 →Column number: 9 (pmids): Minor formatting, capitalisation changes.
- 13:20, 2 July 2010 diff hist +60 README iRefIndex MITAB2.6 proposal for 7.0 →Column number: 10 (taxa): Formatting changes.
- 12:59, 2 July 2010 diff hist -2,536 README iRefIndex MITAB2.6 proposal for 7.0 Removed column name table entries which were redundant duplicates of the headings. Added a change note about the altA column. Fixed some column types.
- 18:52, 1 July 2010 diff hist -121 README iRefIndex MITAB2.6 proposal for 7.0 Added a canonical interactor row to the explanatory table, moving various columns into it. Propagated column names for #39 and #40. Formatting changes. Updated various column headings.
- 16:59, 1 July 2010 diff hist +54,037 N README iRefIndex MITAB2.6 proposal for 7.0 Formatted the note at the top, added the table from 7.0 explaining the columns, added a last updated "macro". Introduced change note formatting. Formatted various examples.
- 16:33, 1 July 2010 diff hist +260 Template:Note →Usage: Added note about method 1. current
- 16:28, 1 July 2010 diff hist -4 Template:Note →Method 1: Attempt to make the template actually work.
- 16:26, 1 July 2010 diff hist +2 Template:Note →Method 1: Attempt to make the template actually work.
- 16:17, 1 July 2010 diff hist +726 Template:Note Added support for a different label, hopefully.
- 16:06, 1 July 2010 diff hist +17 Template:Note Changed text appearance.
- 16:05, 1 July 2010 diff hist +17 Template:Warning Changed text appearance. current
- 15:41, 1 July 2010 diff hist +21 Template:Warning Edited to match the note template.
- 15:39, 1 July 2010 diff hist +57 Template:Note Added padding and border.
- 15:37, 1 July 2010 diff hist -42 Template:Note Changed the label depending on whether a parameter is supplied.
- 15:16, 1 July 2010 diff hist +3 Template:Warning Changed icon alignment.
- 15:09, 1 July 2010 diff hist +3 Template:Note Changed icon alignment.
- 13:32, 1 July 2010 diff hist 0 Template:Note Fixed usage.
- 13:16, 1 July 2010 diff hist +172 Template:Note Fixed template rule, adopting the warning template's rule.
- 13:13, 1 July 2010 diff hist +33 N File:Attention niels epting.svg Warning icon from MediaWiki 1.16. current
- 13:12, 1 July 2010 diff hist +33 N File:Attention niels epting-18px.svg.png Warning icon from MediaWiki 1.16. current
- 13:07, 1 July 2010 diff hist 0 Template:Warning Fixed usage.
- 12:52, 1 July 2010 diff hist 0 Template:Note →Usage: Fixed template usage.
- 09:59, 1 July 2010 diff hist -82 Bioinformatics course Switched to percentages. Removed weird "skype highlighting" text. Tidied whitespace. Fixed year.
- 14:46, 30 June 2010 diff hist +113 iRefIndex MITAB2.5 Parser Added a link to the format description.
- 11:59, 30 June 2010 diff hist +77 Donaldson Group Tidied the content. Updated the Bioseminar details.
- 13:39, 15 June 2010 diff hist +900 Bioscape Searching Techniques Added example involving collections/sequences.
- 12:58, 14 June 2010 diff hist 0 m iRefScape 0.8 Installation Minor notation changes.
- 16:02, 10 June 2010 diff hist +193 iRefScape 0.8 Installation →Manual Installation: Improved and extended the note.
- 10:59, 10 June 2010 diff hist 0 m iRefIndex Minor capitalisation and punctuation fixes.
- 10:56, 10 June 2010 diff hist +24 m iRefScape 0.8 Installation Added category.
- 10:32, 10 June 2010 diff hist +1 m iRefScape 0.8 Installation Minor capitalisation and punctuation fixes.
- 10:14, 10 June 2010 diff hist +461 iRefScape 0.8 Installation Various formatting and other changes/updates.
- 09:45, 9 June 2010 diff hist -134 m iRefScape 0.8 Formatting changes to tables.
- 14:43, 8 June 2010 diff hist +72 iRefScape 0.8 Modified headings. Moved images.
- 14:37, 8 June 2010 diff hist +284 iRefScape 0.8 →Advanced path-finding: Added new images.
- 14:37, 8 June 2010 diff hist +32 N File:iRefIndex-0.83-path-original.png The path highlighted in a graph. current
- 14:25, 8 June 2010 diff hist 0 File:iRefIndex-0.83-path.png uploaded a new version of "File:iRefIndex-0.83-path.png": A path highlighted in a graph. current
- 14:22, 8 June 2010 diff hist +30 N File:iRefIndex-0.83-path.png A path highlighted in a graph.
- 14:21, 8 June 2010 diff hist +53 N File:iRefIndex-0.83-path-selector.png The path selector for search results producing paths. current
- 12:37, 8 June 2010 diff hist +1,422 iRefScape 0.8 Further edits, tidying.
- 11:37, 8 June 2010 diff hist +2,254 iRefScape 0.8 Various formatting and other changes/updates.
- 11:13, 8 June 2010 diff hist 0 File:iRefIndex-0.83-node-attributes-close-up-closed.png uploaded a new version of "File:iRefIndex-0.83-node-attributes-close-up-closed.png": The location of the node attributes menu. current
- 10:58, 8 June 2010 diff hist +30 N File:iRefIndex-0.83-node-attributes-close-up-open.png The open node attributes menu. current
- 10:57, 8 June 2010 diff hist +41 N File:iRefIndex-0.83-node-attributes-close-up-closed.png The location of the node attributes menu.
- 09:50, 2 June 2010 diff hist +8 m Plugin test cases 0.8 Fixed syntax to make query inputs clearer.
- 12:40, 21 May 2010 diff hist +1,219 Bioscape Issues and Tasks Added a task list.
- 12:26, 21 May 2010 diff hist +276 N iRefIndex Issues and Notes New page: This document describes ongoing work to improve the iRefIndex software. == Tasks == * Validation documentation * Fix/improve SaxValidator to automate troubleshooting * Write a top-level ...
- 12:24, 21 May 2010 diff hist +99 iRefIndex Development Added link to a new page.
- 17:19, 18 May 2010 diff hist +2 m README iRefIndex Feedback 7.0 Fixed syntax. current
- 17:17, 18 May 2010 diff hist +2 m README iRefIndex MITAB experiment proposal for 7.0 →Changes from last version: Formatting changes.
- 17:16, 18 May 2010 diff hist +2 m README iRefIndex MITAB 7.0 →Changes from last version: Formatting changes. current
- 17:15, 18 May 2010 diff hist +51 Statistics iRefIndex 7.0 →Summary: Changed last updated date.
- 15:34, 14 May 2010 diff hist +595 Bioscape Configuration →Bioscape: Updated the configuration script instructions.
- 13:03, 28 April 2010 diff hist +1,663 iRefIndex Maintenance Added some recommendations.
- 17:18, 27 April 2010 diff hist +235 iRefIndex Maintenance Restructured somewhat, added remark about non-existent alternatives.
- 17:14, 26 April 2010 diff hist +419 iRefIndex Maintenance Added XtraBackup notes.
- 14:21, 26 April 2010 diff hist +359 iRefIndex Maintenance →Moving Tables into Separate Table Files: Added conclusion about the table optimisation approach.
- 13:36, 26 April 2010 diff hist +416 iRefIndex Maintenance →Moving Tables into Separate Table Files: Added notes about the outcome of table optimisation.
- 11:58, 23 April 2010 diff hist +1,255 iRefIndex Maintenance Added table moving notes.
- 14:24, 21 April 2010 diff hist +232 Bioscape Configuration →Web Interface: Moved preparation script, added system package notes.
- 12:20, 21 April 2010 diff hist +3,768 N Bioscape Configuration Moved from the installation page, removing the database configuration section (now redundant).
- 12:19, 21 April 2010 diff hist -3,889 Bioscape Installation Moved configuration information to another page.
- 12:19, 21 April 2010 diff hist +29 Bioscape Manual Added new page.
- 10:51, 20 April 2010 diff hist +296 iRefIndex Maintenance →Dumping and Restoring Databases: Added background-capable commands.
- 10:06, 20 April 2010 diff hist +843 iRefIndex Maintenance Added dump/restore recommendations.
- 16:51, 16 April 2010 diff hist -3 Bioscape Installation →Quick Start: Fixed command options.
- 16:44, 16 April 2010 diff hist +804 Bioscape Installation →PostgreSQL: Added notes about encoding/locale issues and cluster reinitialisation.
- 13:24, 29 March 2010 diff hist +4,774 N Sources iRefIndex 7.0 Initial version for 7.0.
- 13:19, 29 March 2010 diff hist +64 Sources and Issues Next Release Added variable usage for the last edited date.
- 17:47, 26 March 2010 diff hist +751 Bioscape Result Assessment →Comparing BioCreative Results and Bioscape Results: Added ambiguity result set notes.
- 19:07, 23 March 2010 diff hist +2,512 iRefIndex MITAB2.5 Parser Added schema description.
- 18:35, 23 March 2010 diff hist +11 iRefIndex MITAB2.5 Parser →Creating the Database: Using preferred option to create the database.
- 18:24, 23 March 2010 diff hist +9 README iRefIndex MITAB 7.0 →Column number: 1 (uidA): ROGID of complex is RIGID.
- 18:20, 23 March 2010 diff hist +19 README iRefIndex MITAB 7.0 →Column number: 1 (uidA): Changed the wording slightly, reformatted.
- 17:05, 23 March 2010 diff hist +114 README iRefIndex MITAB 7.0 →Column number: 14 (interactionIdentifiers): Changed example to include an iRefIndex identifier.
- 15:03, 23 March 2010 diff hist -67 README iRefIndex MITAB 7.0 →Column number: 14 (interactionIdentifiers): Changed FOUND to - for unavailable identifiers.
- 12:01, 23 March 2010 diff hist +28,869 N README iRefIndex MITAB 7.0 Initial version for 7.0.
- 16:54, 19 March 2010 diff hist +78 README iRefIndex MITAB 6.1 →Understanding the iRefIndex MITAB format: Added full text link.
- 17:24, 18 March 2010 diff hist +82 iRefIndex Maintenance Added another solution link.
- 14:47, 18 March 2010 diff hist +449 README iRefIndex MITAB 6.1 →Understanding the iRefIndex MITAB format: Added column summary table.
- 14:48, 16 March 2010 diff hist +144 iRefIndex Output and Statistics →Running PSI_MI_TAB_Maker: Added note about table preparation.
- 14:11, 15 March 2010 diff hist +41 Bioscape Result Assessment →Isolating Correct and Incorrect Bioscape Results: Added true positive distinctions.
- 19:17, 10 March 2010 diff hist +3,089 Bioscape Result Assessment Added BioCreative import details.
- 14:14, 10 March 2010 diff hist +95 iRefIndex Output and Statistics →Running BioPSI_Suplimenter to Produce Statistics: Added note about this step being optional for a completed build process.
- 16:32, 9 March 2010 diff hist +374 iRefIndex Build Process →ROG_ass + RIG_fill+ make Cy: Added note about propagating data from the full version when building the free version.
- 16:24, 9 March 2010 diff hist +207 iRefIndex Build Process →Running BioPSI_Suplimenter (continued): Added workaround.
- 15:54, 9 March 2010 diff hist +13,474 N Statistics iRefIndex free 7.0 Tentative statistics export.
- 11:56, 9 March 2010 diff hist -341 iRefIndex Build Process →ROG_ass + RIG_fill+ make Cy: Simplified Eutils advice.
- 14:57, 1 March 2010 diff hist +70 iRefIndex Build Process →BioGrid: Used a generic filename.
- 11:47, 1 March 2010 diff hist -9 iRefIndex Build Process →BioGrid: Changed ORGANISM to ALL.
- 18:48, 25 February 2010 diff hist +1,016 Bioscape Methods Added filtering and scoring notes.
- 14:01, 25 February 2010 diff hist +1,449 iRefIndex Build Process Added post-parsing validation measures, notes about free/excluded data sources. Removed CORUM preprocessing note.
- 12:44, 25 February 2010 diff hist +53 iRefIndex Build Process →Manual loading of data: Tidied formatting.
- 14:31, 22 February 2010 diff hist +273 iRefIndex Build Process →Running SaxValidator: Added notes about invalid files.
- 19:42, 18 February 2010 diff hist -688 iRefIndex Build Process →Running StaxPSIXML: The CORUM-specific fix does not seem to be necessary on the recently downloaded file.
- 18:11, 18 February 2010 diff hist 0 m iRefIndex Build Process Changed dates and date formats.
- 14:17, 18 February 2010 diff hist +427 iRefIndex Build Process →Fill Bind info: Added notes about the "Base loc" and "Date info" fields.
- 14:03, 18 February 2010 diff hist +579 iRefIndex Build Process →Manual Downloads: Added notes about BIND Translation.
- 16:40, 17 February 2010 diff hist +802 iRefIndex Build Process Added build instructions. Made separate build/running sections.
- 16:22, 17 February 2010 diff hist +1 iRefIndex Build Process →Validation and integrity checks: Changed formatting and date format.
- 14:04, 17 February 2010 diff hist +288 Text Mining Resources Added NLTK-related resources, Wikipedia pronoun page link. current
- 13:59, 17 February 2010 diff hist +1,480 N iRefIndex Maintenance Added a page about maintenance issues.
- 13:41, 17 February 2010 diff hist +28 iRefIndex Manual Added link to a new page.
- 16:55, 16 February 2010 diff hist 0 iRefIndex Release Process Moved feedback section.
- 15:29, 16 February 2010 diff hist -5 iRefIndex Build Process →Building SHA: Changed output directory.
- 16:22, 12 February 2010 diff hist +896 Bioscape Tokenisation →Adopting "Lossy" Tokenisation: Added notes on suitable filtering of tokens.
- 15:30, 12 February 2010 diff hist +1,461 Bioscape Tokenisation Added more details of the different potential tokenisation approaches.
- 18:51, 11 February 2010 diff hist +16 Sources and Issues Next Release →Interaction related resources: Fixed/added dates.
- 14:51, 11 February 2010 diff hist +25 Sources and Issues Next Release →Interaction related resources: Updated versions and dates.
- 14:14, 11 February 2010 diff hist +118 Sources and Issues Next Release →Sequence related resources: Updated versions and dates.
- 14:39, 10 February 2010 diff hist +468 Bioscape Searching →Selecting Search Resources: Added a note about stop word-based terms.
- 18:23, 9 February 2010 diff hist +68 iRefIndex Build Process →Downloading the Source Data: Adjustments to the source lists.
- 12:33, 9 February 2010 diff hist +3 iRefIndex Build Process →DIP: Fixed filename.
- 18:49, 8 February 2010 diff hist 0 iRefIndex Build Process →MIPS: Fixed pathname in example.
- 17:30, 8 February 2010 diff hist +52 iRefIndex Build Process →OPHID: Added deprecation note.
- 17:29, 8 February 2010 diff hist -97 iRefIndex Build Process →I2D: Fixed commands for specific filename details.